2024-04-30 22:19:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_181278 4691 bp mRNA linear ROD 04-AUG-2023 DEFINITION Mus musculus RIKEN cDNA B230219D22 gene (B230219D22Rik), mRNA. ACCESSION NM_181278 NM_198009 VERSION NM_181278.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 4691) AUTHORS Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC, Babbitt PC and Ferrin TE. TITLE BayGenomics: a resource of insertional mutations in mouse embryonic stem cells JOURNAL Nucleic Acids Res 31 (1), 278-281 (2003) PUBMED 12520002 COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from BC051430.1. On or before Oct 15, 2003 this sequence version replaced NM_198009.1, NM_181278.1. ##Evidence-Data-START## Transcript exon combination :: BC051430.1, SRR1660821.171954.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..4691 /organism="Mus musculus" /mol_type="mRNA" /strain="FVB/N" /db_xref="taxon:10090" /chromosome="13" /map="13 30.06 cM" gene 1..4691 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="RIKEN cDNA B230219D22 gene" /db_xref="GeneID:78521" /db_xref="MGI:MGI:1925771" exon 1..224 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /inference="alignment:Splign:2.1.0" exon 225..4652 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /inference="alignment:Splign:2.1.0" CDS 228..794 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /codon_start=1 /product="UPF0461 protein C5orf24 homolog" /protein_id="NP_851795.1" /db_xref="CCDS:CCDS26552.1" /db_xref="GeneID:78521" /db_xref="MGI:MGI:1925771" /translation="
MMHPVAGSNPAFCGPGKPSCLNEDAMRAADQFDLYSSQQNKYSHTVSHKPMVCQRQDPLNETHLQPTSGRNIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMMHSRVVHGLQETSGEVKPPSE"
misc_feature 228..791 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="Family of unknown function (DUF5568); Region: DUF5568; pfam17724" /db_xref="CDD:435992" misc_feature 336..338 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q7Z6I8; propagated from UniProtKB/Swiss-Prot (Q80X32.1); phosphorylation site" misc_feature 465..650 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="propagated from UniProtKB/Swiss-Prot (Q80X32.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 588..590 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q7Z6I8; propagated from UniProtKB/Swiss-Prot (Q80X32.1); phosphorylation site" misc_feature 765..767 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q7Z6I8; propagated from UniProtKB/Swiss-Prot (Q80X32.1); phosphorylation site" ORIGIN
ccggggctgtggcggcttcttcctcccgcgtccggggccccgcggtgagggctccagggagtcgggcgctggcgtggccttcgccgccgccgccgccggccctctgccgtgactggacagggccgcccggagcgggcgcggccggagtgaacggaacgggcgggagctttcctgcctatgggcggcccctgggcgctctgagggccgggctccgagcggccgagaaaatgatgcaccccgttgccggcagtaatccagcgttctgtgggcctggcaagccttcctgcctcaatgaagatgccatgagagctgctgatcagttcgatctgtattcctcccagcaaaacaagtacagccacacagtcagccacaaaccaatggtttgtcagaggcaagacccattaaatgaaacacacttgcagcctaccagtggcagaaacatagagataaaagatgaactaaagaaaaagaaaaacctcaatcgatctggtaagcgaggccggccttcgggaactaccaagtcagcaggataccggaccagcacaggcagacccctgggaactaccaaagcagctggatttaaaacaagtccaggcagacctttgggtacaaccaaagctgcaggatacaaagtcagcccagggagacctccaggtagcattaaagctctgtcccgccttgcagatcttggctatggctgtggcactgctgcctttccttaccctatgatgcatagtagagtggtgcacgggcttcaggaaacgagtggtgaagtcaagccgcccagcgagtgagcgaggcaggagagcaggcgttaggagcaggttgttagttaccccaaagcgtcttgttttaatttgacatgctcttaccacgtggactccccagtgctgtttctgttggctctccctcaccctgcacttctttttctttctttttggcttagaagttgccacaattgagagatgcactttgggcaggagtagtacattgtgtctgtattgtacacagttcactcacaaccctcagcagctaagtcatttttgttttccctttgtgctgttctaagtggactcctcccatgctaagcagctgcccaagttaacttttatttgtgagtaatccattgtgaggcattgtaactgaaggggcagaacagcaactagtgagcagatcagagggatggctgtgtgagtttagaactctgaaataagacgcagctgtctggatgctttggaacttaaaacacagcttcttatttattgattcgcatgacattagttgatcattaatactaaagcgttgtttagtatctgccttgcagagattatagttacaggatgtgtgtttttcaattgcctaagagtataggcagcgccgggcgtggtagcgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcgaggccagcctggtcctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaacaaaaacaaaaacaaaaacaaagagtataggcagcaaacactacaaacaactcagacttaaaacccacacattatagttaatatatgggaaagagaacccttgaaagtctgcatgtaactataatcattctgttttgtctttcatatacttagtgagtttcaaagtattatatttaaaaacatttattactattgttcatttatttggaatttttttagtttttcggagtaattgttattacactgcgttagtacataactgcattttcaggtttatatctaccaaaggacacaaattgagtggttgactgcacaactgatctaagcagaaagcagtttcctggctatcgagacccaaataccgataaatgcaactcattattcatgaaacctgtaaaatgagtgctggttagcataaaaatgtcatcatggcctcttctgaaagaagtctccctagtgttaatacacattttatttattctgagttctaagtaaaatattatgaactttgaagttgagaagctttccctgggccaggtgtggtggtccatgaatttgatctcagcatttgggaggctgaggcaggcagatctctgagtttgaagtctatatagtgccaggacagccaatgctaggtagagagagaccctgtcttaaaaaaacaaaacaaaagaaaagctttttactgaacttaaaaaatgattttacttgcattttaaaatgcctttgagattaaaatatagatttacatgacttaaaaactttacaaataatcagaaatataaaaggacacatactggttggctaggcttgctcagtccatgcaaactgactgactgtaaatcccatgtttcagacctttatcaggggacaagcagcaaatctcaggtgcccatgatagctgacacagcggctggacccctgctcctacaggaagtgctgttacaatgcatgtgggttcagtaacctcagtggtagagcttcacacaaaccatagaagacagtgagcagtgctgggtgaccatttaaccactaaagtgcttcaaagagtttcttcttgcagaagcctagaatataaaaataatttacttaggacagtgtaacttctgacacaggcaaatgcttgcatcttcattgatgtgttcatctggtcacagtatctgtcacttagctgtttctgaagttgttcagcagctggctgttttaaaatccttgcacagctagttcctgaatacagttgaaatagtctagtgtggtatcatctcaccaccaaatgttaaggacttgggtgcatgttgtgtttcatggtgagtccacacggcatccttttgagtttgatttcattcctggctttgtaccttgtcatttcttcttgcccttcccacacgcatccccttccctccgcttgccgcacatgtactcagtggtgctgtgctgcgctgcgtcagcagacagagtgggctactgcataatgcgtttactgtataatgcgtcagaagatagagtgggctactgcataatgcgtttccgatacgtgttcatgagatgggacattggtgtaaggcgatatgtttataacagtgtttatcaggagctctatcccaggaaagggggatggatggatggctacagttgtgactggagcctgaattcactgttcctgtgagcagtcacctggaatattagacgtgtgcactggtgaacacctgatcctacttttctccttgtggacagtttactagtgtcagctggagaggcacggtgaggacgggagtgaagtcttcacatacaaatatttctacttctacatgatctaaagactgcattctgcatcttttgtaacatggtcttttgtcatgacagacactgaaatagcatgtgaaacagttgcctagatgccagtatattcagttggggaaaactgtcgtctcccctgccccacccccactgtataattgttccttaaaaggtaaattgctaattttatactgtgtgattctattcttcataaataggtttcactattctatattaaaactttgtcagaaaatgatgtgctattcaagtaagtttgttttacttttttcttaaaaggatattttaacatgccttatttattattgttatcaaaacaaataaggagtcaatacagatgaaaacgtcattttccacaggtatcaccttgcctaactaatctttagtatggggtgattttgatactatctttggagttttgcactggatatttaaaaatatatatattggcacaatatattgaaaaattaaatagtatttggtttaatttttagtatttgaaacattttttaattagtgtttaaatcagattaacaattctttgtatttttaattacttttttaaaaggaacatctgaaaaatggtatttagtcattccaaactggtatttgtgtgaatttacatatattttcacgaaataagaatataattctttgaggtaaaatctggatccatttattatgaggttaaagatgcttcatccagtgtaataatgactacagtgtttaagtttaaacggtgaacttcttcatactttaagaagctttaagagaacagttcaggggatactacgatgattgctctgtcagttccttgtctttatgcagtaaaattttatgatccgttacagtaacataacaattcacagtagtctcgggcataagaagttttgatgctcttttgtttttgtctgttcaagcccaatgactgcgctcaaatctaagatgtatctaatatttgctttttcccctttccttccaagtagacagacctgtgctctcacatacaatgtatttaagttttttagaagtgatactgtagtaagtcaattgtgtgatttaatcaggccactctgattctttgattcacaatttcctttttccacagacaattatgaaacaaataattgccagttaactgataataagcacgttgtcctctgctgtaaaaagtctgaatagatactgtgtatgttttaatgtccatgaacttgagctactcgtgtgcaattatgtgtatggaatggagtagtgttcatgatttgtatctacatcatcatatggatgtatatttattaataaagtcatcactttaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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