GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-30 22:19:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_181278               4691 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus RIKEN cDNA B230219D22 gene (B230219D22Rik), mRNA.
ACCESSION   NM_181278 NM_198009
VERSION     NM_181278.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4691)
  AUTHORS   Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng
            EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC,
            Babbitt PC and Ferrin TE.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            BC051430.1.
            
            On or before Oct 15, 2003 this sequence version replaced
            NM_198009.1, NM_181278.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC051430.1, SRR1660821.171954.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4691
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="FVB/N"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 30.06 cM"
     gene            1..4691
                     /gene="B230219D22Rik"
                     /gene_synonym="D530037I19Rik"
                     /note="RIKEN cDNA B230219D22 gene"
                     /db_xref="GeneID:78521"
                     /db_xref="MGI:MGI:1925771"
     exon            1..224
                     /gene="B230219D22Rik"
                     /gene_synonym="D530037I19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            225..4652
                     /gene="B230219D22Rik"
                     /gene_synonym="D530037I19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             228..794
                     /gene="B230219D22Rik"
                     /gene_synonym="D530037I19Rik"
                     /codon_start=1
                     /product="UPF0461 protein C5orf24 homolog"
                     /protein_id="NP_851795.1"
                     /db_xref="CCDS:CCDS26552.1"
                     /db_xref="GeneID:78521"
                     /db_xref="MGI:MGI:1925771"
                     /translation="
MMHPVAGSNPAFCGPGKPSCLNEDAMRAADQFDLYSSQQNKYSHTVSHKPMVCQRQDPLNETHLQPTSGRNIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMMHSRVVHGLQETSGEVKPPSE"
     misc_feature    228..791
                     /gene="B230219D22Rik"
                     /gene_synonym="D530037I19Rik"
                     /note="Family of unknown function (DUF5568); Region:
                     DUF5568; pfam17724"
                     /db_xref="CDD:435992"
     misc_feature    336..338
                     /gene="B230219D22Rik"
                     /gene_synonym="D530037I19Rik"
                     /note="Phosphoserine.
                     /evidence=ECO:0000250|UniProtKB:Q7Z6I8; propagated from
                     UniProtKB/Swiss-Prot (Q80X32.1); phosphorylation site"
     misc_feature    465..650
                     /gene="B230219D22Rik"
                     /gene_synonym="D530037I19Rik"
                     /note="propagated from UniProtKB/Swiss-Prot (Q80X32.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    588..590
                     /gene="B230219D22Rik"
                     /gene_synonym="D530037I19Rik"
                     /note="Phosphoserine.
                     /evidence=ECO:0000250|UniProtKB:Q7Z6I8; propagated from
                     UniProtKB/Swiss-Prot (Q80X32.1); phosphorylation site"
     misc_feature    765..767
                     /gene="B230219D22Rik"
                     /gene_synonym="D530037I19Rik"
                     /note="Phosphoserine.
                     /evidence=ECO:0000250|UniProtKB:Q7Z6I8; propagated from
                     UniProtKB/Swiss-Prot (Q80X32.1); phosphorylation site"
ORIGIN      
ccggggctgtggcggcttcttcctcccgcgtccggggccccgcggtgagggctccagggagtcgggcgctggcgtggccttcgccgccgccgccgccggccctctgccgtgactggacagggccgcccggagcgggcgcggccggagtgaacggaacgggcgggagctttcctgcctatgggcggcccctgggcgctctgagggccgggctccgagcggccgagaaaatgatgcaccccgttgccggcagtaatccagcgttctgtgggcctggcaagccttcctgcctcaatgaagatgccatgagagctgctgatcagttcgatctgtattcctcccagcaaaacaagtacagccacacagtcagccacaaaccaatggtttgtcagaggcaagacccattaaatgaaacacacttgcagcctaccagtggcagaaacatagagataaaagatgaactaaagaaaaagaaaaacctcaatcgatctggtaagcgaggccggccttcgggaactaccaagtcagcaggataccggaccagcacaggcagacccctgggaactaccaaagcagctggatttaaaacaagtccaggcagacctttgggtacaaccaaagctgcaggatacaaagtcagcccagggagacctccaggtagcattaaagctctgtcccgccttgcagatcttggctatggctgtggcactgctgcctttccttaccctatgatgcatagtagagtggtgcacgggcttcaggaaacgagtggtgaagtcaagccgcccagcgagtgagcgaggcaggagagcaggcgttaggagcaggttgttagttaccccaaagcgtcttgttttaatttgacatgctcttaccacgtggactccccagtgctgtttctgttggctctccctcaccctgcacttctttttctttctttttggcttagaagttgccacaattgagagatgcactttgggcaggagtagtacattgtgtctgtattgtacacagttcactcacaaccctcagcagctaagtcatttttgttttccctttgtgctgttctaagtggactcctcccatgctaagcagctgcccaagttaacttttatttgtgagtaatccattgtgaggcattgtaactgaaggggcagaacagcaactagtgagcagatcagagggatggctgtgtgagtttagaactctgaaataagacgcagctgtctggatgctttggaacttaaaacacagcttcttatttattgattcgcatgacattagttgatcattaatactaaagcgttgtttagtatctgccttgcagagattatagttacaggatgtgtgtttttcaattgcctaagagtataggcagcgccgggcgtggtagcgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcgaggccagcctggtcctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaacaaaaacaaaaacaaaaacaaagagtataggcagcaaacactacaaacaactcagacttaaaacccacacattatagttaatatatgggaaagagaacccttgaaagtctgcatgtaactataatcattctgttttgtctttcatatacttagtgagtttcaaagtattatatttaaaaacatttattactattgttcatttatttggaatttttttagtttttcggagtaattgttattacactgcgttagtacataactgcattttcaggtttatatctaccaaaggacacaaattgagtggttgactgcacaactgatctaagcagaaagcagtttcctggctatcgagacccaaataccgataaatgcaactcattattcatgaaacctgtaaaatgagtgctggttagcataaaaatgtcatcatggcctcttctgaaagaagtctccctagtgttaatacacattttatttattctgagttctaagtaaaatattatgaactttgaagttgagaagctttccctgggccaggtgtggtggtccatgaatttgatctcagcatttgggaggctgaggcaggcagatctctgagtttgaagtctatatagtgccaggacagccaatgctaggtagagagagaccctgtcttaaaaaaacaaaacaaaagaaaagctttttactgaacttaaaaaatgattttacttgcattttaaaatgcctttgagattaaaatatagatttacatgacttaaaaactttacaaataatcagaaatataaaaggacacatactggttggctaggcttgctcagtccatgcaaactgactgactgtaaatcccatgtttcagacctttatcaggggacaagcagcaaatctcaggtgcccatgatagctgacacagcggctggacccctgctcctacaggaagtgctgttacaatgcatgtgggttcagtaacctcagtggtagagcttcacacaaaccatagaagacagtgagcagtgctgggtgaccatttaaccactaaagtgcttcaaagagtttcttcttgcagaagcctagaatataaaaataatttacttaggacagtgtaacttctgacacaggcaaatgcttgcatcttcattgatgtgttcatctggtcacagtatctgtcacttagctgtttctgaagttgttcagcagctggctgttttaaaatccttgcacagctagttcctgaatacagttgaaatagtctagtgtggtatcatctcaccaccaaatgttaaggacttgggtgcatgttgtgtttcatggtgagtccacacggcatccttttgagtttgatttcattcctggctttgtaccttgtcatttcttcttgcccttcccacacgcatccccttccctccgcttgccgcacatgtactcagtggtgctgtgctgcgctgcgtcagcagacagagtgggctactgcataatgcgtttactgtataatgcgtcagaagatagagtgggctactgcataatgcgtttccgatacgtgttcatgagatgggacattggtgtaaggcgatatgtttataacagtgtttatcaggagctctatcccaggaaagggggatggatggatggctacagttgtgactggagcctgaattcactgttcctgtgagcagtcacctggaatattagacgtgtgcactggtgaacacctgatcctacttttctccttgtggacagtttactagtgtcagctggagaggcacggtgaggacgggagtgaagtcttcacatacaaatatttctacttctacatgatctaaagactgcattctgcatcttttgtaacatggtcttttgtcatgacagacactgaaatagcatgtgaaacagttgcctagatgccagtatattcagttggggaaaactgtcgtctcccctgccccacccccactgtataattgttccttaaaaggtaaattgctaattttatactgtgtgattctattcttcataaataggtttcactattctatattaaaactttgtcagaaaatgatgtgctattcaagtaagtttgttttacttttttcttaaaaggatattttaacatgccttatttattattgttatcaaaacaaataaggagtcaatacagatgaaaacgtcattttccacaggtatcaccttgcctaactaatctttagtatggggtgattttgatactatctttggagttttgcactggatatttaaaaatatatatattggcacaatatattgaaaaattaaatagtatttggtttaatttttagtatttgaaacattttttaattagtgtttaaatcagattaacaattctttgtatttttaattacttttttaaaaggaacatctgaaaaatggtatttagtcattccaaactggtatttgtgtgaatttacatatattttcacgaaataagaatataattctttgaggtaaaatctggatccatttattatgaggttaaagatgcttcatccagtgtaataatgactacagtgtttaagtttaaacggtgaacttcttcatactttaagaagctttaagagaacagttcaggggatactacgatgattgctctgtcagttccttgtctttatgcagtaaaattttatgatccgttacagtaacataacaattcacagtagtctcgggcataagaagttttgatgctcttttgtttttgtctgttcaagcccaatgactgcgctcaaatctaagatgtatctaatatttgctttttcccctttccttccaagtagacagacctgtgctctcacatacaatgtatttaagttttttagaagtgatactgtagtaagtcaattgtgtgatttaatcaggccactctgattctttgattcacaatttcctttttccacagacaattatgaaacaaataattgccagttaactgataataagcacgttgtcctctgctgtaaaaagtctgaatagatactgtgtatgttttaatgtccatgaacttgagctactcgtgtgcaattatgtgtatggaatggagtagtgttcatgatttgtatctacatcatcatatggatgtatatttattaataaagtcatcactttaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]