LOCUS       NM_029733                528 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus cystatin A family member 2 (Csta2), transcript variant
            2, mRNA.
ACCESSION   NM_029733
VERSION     NM_029733.3
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC125422.1.
            
            On Feb 13, 2008 this sequence version replaced NM_029733.2.
            
            Transcript Variant: Variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC125396.1, AK008122.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-528               BC125422.1         1-528
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 25.44 cM"
     gene            1..528
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /note="cystatin A family member 2"
                     /db_xref="GeneID:76770"
                     /db_xref="MGI:MGI:1924020"
     exon            1..85
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    78..80
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /note="upstream in-frame stop codon"
     exon            86..147
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            148..245
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             180..473
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /codon_start=1
                     /product="Cystatin-A-like"
                     /protein_id="NP_084009.1"
                     /db_xref="CCDS:CCDS37330.1"
                     /db_xref="GeneID:76770"
                     /db_xref="MGI:MGI:1924020"
                     /translation="

MMPGGLSRARSATPEIQEIANKVKSLLEEKTNEKYEVFKAVEYKSQVVAGQNYFIKMDVGGGCFLHIKVFTGISGENVLELSGYQTNKTRKDELSYF"

     misc_feature    189..449
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /note="Cystatin domain; Region: Cystatin; pfam00031"
                     /db_xref="CDD:425431"
     misc_feature    order(315..323,327..329)
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /note="putative proteinase inhibition site [active]"
                     /db_xref="CDD:238002"
     exon            246..347
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            348..528
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtgccaaagaaatccgggacctgaatcccccactgaagaggttcagaactttctgcagtcagggtctgtcgacagaatgagtacggtgtaccattcctaaggactgccatccaaattcatcataccctgtcggttactcttctggagtgtcctatcgagcaaagaagcaactcatcagaatgatgcctggaggcttgtcacgggccagatctgccacaccagaaatccaggagattgctaataaggtcaagtcactgcttgaagagaaaaccaatgagaaatatgaagtgttcaaagctgttgagtataaatctcaagtcgtcgctggacaaaattacttcattaagatggatgttggtggtggttgtttcctccacataaaagtcttcacagggatttctggagaaaatgtcttggaacttagtggttaccagactaacaaaaccaggaaagatgagctgtcctacttctaagcagcaaattctaaagtgtcctgactcttctccttgtaaacagatttggccatca

//