LOCUS       NM_001384090             417 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus cystatin A family member 2 (Csta2), transcript variant
            1, mRNA.
ACCESSION   NM_001384090 XM_006522699
VERSION     NM_001384090.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT033776.8.
            
            On May 28, 2020 this sequence version replaced XM_006522699.3.
            
            Transcript Variant: Variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY392927.1, SRR7652917.174039.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-114               CT033776.8         32979-33092
            115-216             CT033776.8         35522-35623
            217-417             CT033776.8         37224-37424
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 25.44 cM"
     gene            1..417
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /note="cystatin A family member 2"
                     /db_xref="GeneID:76770"
                     /db_xref="MGI:MGI:1924020"
     exon            1..114
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    13..15
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /note="upstream in-frame stop codon"
     CDS             49..342
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /codon_start=1
                     /product="Cystatin-A-like"
                     /protein_id="NP_001371019.1"
                     /db_xref="GeneID:76770"
                     /db_xref="MGI:MGI:1924020"
                     /translation="

MMPGGLSRARSATPEIQEIANKVKSLLEEKTNEKYEVFKAVEYKSQVVAGQNYFIKMDVGGGCFLHIKVFTGISGENVLELSGYQTNKTRKDELSYF"

     misc_feature    58..318
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /note="Cystatin domain; Region: Cystatin; pfam00031"
                     /db_xref="CDD:425431"
     misc_feature    order(184..192,196..198)
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /note="putative proteinase inhibition site [active]"
                     /db_xref="CDD:238002"
     exon            115..216
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            217..417
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gatcatttcttctaagtgtcctatcgagcaaagaagcaactcatcagaatgatgcctggaggcttgtcacgggccagatctgccacaccagaaatccaggagattgctaataaggtcaagtcactgcttgaagagaaaaccaatgagaaatatgaagtgttcaaagctgttgagtataaatctcaagtcgtcgctggacaaaattacttcattaagatggatgttggtggtggttgtttcctccacataaaagtcttcacagggatttctggagaaaatgtcttggaacttagtggttaccagactaacaaaaccaggaaagatgagctgtcctacttctaagcagcaaattctaaagtgtcctgactcttctccttgtaaacagatttggccatcaataaagaatcaatcttgaaa

//